nipype.interfaces.slicer.segmentation.simpleregiongrowingsegmentation module¶
Autogenerated file - DO NOT EDIT If you spot a bug, please report it on the mailing list and/or change the generator.
SimpleRegionGrowingSegmentation¶
Bases: SEMLikeCommandLine
Wrapped executable:
SimpleRegionGrowingSegmentation
.title: Simple Region Growing Segmentation
category: Segmentation
description: A simple region growing segmentation algorithm based on intensity statistics. To create a list of fiducials (Seeds) for this algorithm, click on the tool bar icon of an arrow pointing to a starburst fiducial to enter the ‘place a new object mode’ and then use the fiducials module. This module uses the Slicer Command Line Interface (CLI) and the ITK filters CurvatureFlowImageFilter and ConfidenceConnectedImageFilter.
version: 0.1.0.$Revision: 19904 $(alpha)
documentation-url: http://www.slicer.org/slicerWiki/index.php/Documentation/4.1/Modules/SimpleRegionGrowingSegmentation
contributor: Jim Miller (GE)
acknowledgements: This command module was derived from Insight/Examples (copyright) Insight Software Consortium
- argsa unicode string
Additional parameters to the command. Maps to a command-line argument:
%s
.- environa dictionary with keys which are a bytes or None or a value of class ‘str’ and with values which are a bytes or None or a value of class ‘str’
Environment variables. (Nipype default value:
{}
)- inputVolumea pathlike object or string representing an existing file
Input volume to be filtered. Maps to a command-line argument:
%s
(position: -2).- iterationsan integer (int or long)
Number of iterations of region growing. Maps to a command-line argument:
--iterations %d
.- labelvaluean integer (int or long)
The integer value (0-255) to use for the segmentation results. This will determine the color of the segmentation that will be generated by the Region growing algorithm. Maps to a command-line argument:
--labelvalue %d
.- multipliera float
Number of standard deviations to include in intensity model. Maps to a command-line argument:
--multiplier %f
.- neighborhoodan integer (int or long)
The radius of the neighborhood over which to calculate intensity model. Maps to a command-line argument:
--neighborhood %d
.- outputVolumea boolean or a pathlike object or string representing a file
Output filtered. Maps to a command-line argument:
%s
(position: -1).- seeda list of items which are a list of from 3 to 3 items which are a float
Seed point(s) for region growing. Maps to a command-line argument:
--seed %s...
.- smoothingIterationsan integer (int or long)
Number of smoothing iterations. Maps to a command-line argument:
--smoothingIterations %d
.- timestepa float
Timestep for curvature flow. Maps to a command-line argument:
--timestep %f
.
- outputVolumea pathlike object or string representing an existing file
Output filtered.