Package htsjdk.samtools.cram.build
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Class Summary Class Description CompressionHeaderFactory Factory for creating CRAM compression headers for containers when writing to a CRAM stream.ContainerFactory CramContainerHeaderIterator Iterate over CRAM containers from an input stream, and unlikeCramContainerIterator
only the header of each container is read, rather than the whole stream.CramContainerIterator An iterator of CRAM containers read from anInputStream
.CramIO A collection of methods to read and write special values to/from CRAM files.CRAMReferenceRegion A (cached) region of a reference.CramSpanContainerIterator An iterator of CRAM containers read from locations in aSeekableStream
.SliceFactory Factory for creatingSlice
s when writing a CRAM stream.Utils