Package htsjdk.variant.variantcontext.writer
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Interface Summary Interface Description VariantContextWriter this class writes VCF files -
Class Summary Class Description AsyncVariantContextWriter AsyncVariantContextWriter that can be wrapped around an underlying AsyncVariantContextWriter to provide asynchronous output.BCF2Encoder See #BCFWriter for documentation on this classes role in encoding BCF2 filesBCF2FieldEncoder See #BCFWriter for documentation on this classes role in encoding BCF2 filesBCF2FieldEncoder.AtomicInt Specialized int encoder for atomic (non-list) integersBCF2FieldEncoder.Flag BCF2FieldEncoder.Float BCF2FieldEncoder.GenericInts BCF2FieldEncoder.IntArray BCF2FieldEncoder.StringOrCharacter BCF2FieldWriter See #BCFWriter for documentation on this classes role in encoding BCF2 filesBCF2FieldWriter.FTGenotypesWriter BCF2FieldWriter.GenericSiteWriter BCF2FieldWriter.GenotypesWriter BCF2FieldWriter.GTWriter BCF2FieldWriter.IGFGenotypesWriter BCF2FieldWriter.IntegerTypeGenotypesWriter BCF2FieldWriter.SiteWriter BCF2FieldWriter.StaticallyTypeGenotypesWriter BCF2FieldWriterManager See #BCFWriter for documentation on this classes role in encoding BCF2 filesIntGenotypeFieldAccessors A convenient way to provide a single view on the many int and int[] field values we work with, for writing out the values.IntGenotypeFieldAccessors.Accessor IntGenotypeFieldAccessors.ADAccessor IntGenotypeFieldAccessors.DPAccessor IntGenotypeFieldAccessors.GQAccessor IntGenotypeFieldAccessors.PLAccessor SortingVariantContextWriter Deprecated. 9/2017, this class is completely untested and unsupported, there is no replacement at this time if you use this class please file an issue on github or it will be removed at some point in the futureVariantContextWriterBuilder -
Enum Summary Enum Description Options Available writer options for VariantContextWritersVariantContextWriterBuilder.OutputType