Class QueryInterval

    • Field Detail

      • referenceIndex

        public final int referenceIndex
        Index of reference sequence, based on the sequence dictionary of the BAM file being queried.
      • start

        public final int start
        1-based, inclusive
      • end

        public final int end
        1-based, inclusive. If <= 0, implies that the interval goes to the end of the reference sequence
    • Constructor Detail

      • QueryInterval

        public QueryInterval​(int referenceIndex,
                             int start,
                             int end)