Package htsjdk.samtools
Class BAMStartingAtIteratorFilter
- java.lang.Object
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- htsjdk.samtools.BAMStartingAtIteratorFilter
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public class BAMStartingAtIteratorFilter extends Object
A decorating iterator that filters out records that do not match the given reference and start position.
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Constructor Summary
Constructors Constructor Description BAMStartingAtIteratorFilter(int referenceIndex, int start)
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description htsjdk.samtools.BAMIteratorFilter.FilteringIteratorState
compareToFilter(SAMRecord record)
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Method Detail
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compareToFilter
public htsjdk.samtools.BAMIteratorFilter.FilteringIteratorState compareToFilter(SAMRecord record)
- Returns:
- MATCHES_FILTER if this record matches the filter; CONTINUE_ITERATION if does not match filter but iteration should continue; STOP_ITERATION if does not match filter and iteration should end.
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