Interface | Description |
---|---|
HapPair |
Interface
HapPair represents a pair of haplotypes for a sample. |
HapPairs |
Interface
HapPairs represents a list of haplotype pairs. |
SampleHapPairs |
Interface
SampleHapPairs represents a list of samples and a
haplotype pair for each sample. |
Class | Description |
---|---|
BasicHapPairs |
Class
BasicHapPairs represents a list of haplotype pairs. |
BasicSampleHapPairs |
Class
BasicSampleHapPairs stores a list of samples and a
haplotype pair for each sample. |
BitHapPair |
Class
BitHapPair represents a pair of haplotypes for a sample. |
ConsensusPhaser |
Class
ConsensusPhaser contains a static method for
calculating a consensus phasing from multiple estimated haplotype pairs
for an individual. |
GenotypeCorrection |
Class
GenotypeCorrection removes any inconsistencies between
haplotype pairs and genotypes that determine genotype likelihoods. |
GLSampleHapPairs |
Class
GLSampleHapPairs wraps a GL instance that stores
phased, non-missing genotypes. |
HapsMarkerIterator |
Class
HapsMarkerIterator represents a file iterator whose
next() method returns HapsMarker objects. |
RefHapPairs |
Class
RefHapPairs stores a list of samples and a
haplotype pair for each sample. |
RevHapPair |
Class
RevHapPair is a wrapper for a HapPair
instance. |
RevHapPairs |
Class
RevHapPairs is a wrapper for a HapPairs
instance. |
RevSampleHapPairs |
Class
RevSampleHapPairs is a wrapper for a SampleHapPairs
instance. |
Weights |
Class
Weights represents per-haplotype weights. |
WrappedHapPair |
Class
WrappedHapPair is a HapPair instance
that wraps a SampleHapPairs object. |