Interface | Description |
---|---|
IntInterval |
Interface
IntInterval represents an interval of
consecutive integers. |
IntIntervalTree<E extends IntInterval> |
Interface
IntIntervalTree represents an interval
tree whose elements are IntInterval objects. |
Class | Description |
---|---|
BasicIntInterval |
Class
BasicIntInterval represents an interval of
consecutive integers. |
CenteredIntIntervalTree<E extends IntInterval & java.lang.Comparable<E>> |
Class
CenteredIntIntervalTree implements a centered
interval tree that stores IntInterval objects. |
ChromIds |
Class
ChromIds is a singleton class that represents a
list of chromosome identifiers. |
ChromInterval |
Class
ChromInterval represents a chromosome interval whose
end points are genome coordinates. |
SampleIds |
Class
SampleIds is a singleton class that represents a
list of sample identifiers. |
Samples |
Class
Samples stores a list of samples. |
ThreadSafeIndexer<T> |
Class
ThreadSafeIndexer indexes objects. |
Enum | Description |
---|---|
Phase |
Class
Phase represents the equivalence of two phased genotypes
for a marker or for a set of markers. |